PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA476
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 285aa    MW: 32546.1 Da    PI: 4.8321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA476genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-13239645
                             HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                              +E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Tp57577_TGAC_v2_mRNA476  2 HQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 39
                             68999************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.51E-10139No hitNo description
SMARTSM007172.0E-8144IPR001005SANT/Myb domain
PfamPF002491.0E-11140IPR001005SANT/Myb domain
PROSITE profilePS5129421.916146IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-18242IPR009057Homeodomain-like
SuperFamilySSF466891.01E-11250IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
SHQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLFSHD FIPSFTTFSN  60
IHTPYNIGST MDSFFPNPNV ILNINHHHQD QLYLPTSSPN QQGFHQIDTK VDINNQYKSN  120
FIHIQNPIQE IVQPISNPTP YEDTWSLDCV ALHHKSNQEN QISKSDTTPL NSVDKLINPI  180
ELMQQYDQYH DDPHLVELDQ PIMPKLVNDQ TLEDYVCSIL DSSNSQEHET STKIECYTSS  240
IVYPQDQILE ANQLDYNIDA LMSSLPSSSS QIVTNHIMTL GWEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1314663108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA476
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444369.11e-123transcription factor MYB26
TrEMBLA0A072TMJ51e-121A0A072TMJ5_MEDTR; Myb transcription factor
STRINGXP_004510395.11e-107(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.24e-24myb domain protein 26