PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4784

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

YABBY

Protein Properties

Length: 182aa MW: 20394.4 Da PI: 8.6109

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4784	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	222.8	9.4e-69	7	161	6	169
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 +e+vCyv+CnfCntilav+vP++s++++vtvrCGhC++llsvn+ as + + +l ++ k+++ e+ +++ ++ ++ Tp57577_TGAC_v2_mRNA4784 7 GTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVAASLQPFSPPQLPQAQKQHIILEEPSSK------EMGSS 85 589******************************************999999999988887777655443332......23333 PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+ ++++s ++ ++e pr+pp irP ekr rvPsaynrfikeeiqrika+nPdishreafs aaknWahfP+ihfg Tp57577_TGAC_v2_mRNA4784 86 SKCNKIAS--FEAVVEHEQPRIPP-IRPIEKRHRVPSAYNRFIKEEIQRIKAGNPDISHREAFSSAAKNWAHFPHIHFG 161 33344444..34555678899999.9**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.2E-69	8	161	IPR006780	YABBY protein
SuperFamily	SSF47095	4.32E-7	107	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.0E-4	116	156	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSMDMMGTER VCYVHCNFCN TILAVNVPYS SMLTIVTVRC GHCANLLSVN MVAASLQPFS 60 PPQLPQAQKQ HIILEEPSSK EMGSSSKCNK IASFEAVVEH EQPRIPPIRP IEKRHRVPSA 120 YNRFIKEEIQ RIKAGNPDIS HREAFSSAAK NWAHFPHIHF GKQQAKLDHG EGTHEKTNGF 180 Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4784

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572822.1	1e-112	putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-66	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S3EAG3	1e-111	A0A1S3EAG3_CICAR; putative axial regulator YABBY 2
STRING	GLYMA12G10210.3	1e-100	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-57	YABBY family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4784

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]