PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4955

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 252aa MW: 28108.2 Da PI: 9.384

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4955	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7e-11	188	232	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR ri +++ +L+el+P+ + k +++Le+Av+YI++Lq Tp57577_TGAC_v2_mRNA4955 188 VAERVRRTRISERMRKLQELVPNiD-----KQTCTSDMLELAVDYINDLQ 232 78*******************55.....667888***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.973	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-15	184	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.10E-10	185	236	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.1E-13	186	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-10	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-8	188	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDRNPSNHSS SSASSSMMVG SSMGMDQTNR TTSPAGHFSN NNIISFANGY DTMKGVENYD 60 GVNDSDGELT LSMNILKNQI GFSPKSHSSL GRLSHNSKTR SDGIGTTRHD DGRQDGNDDT 120 QYYGHKFLYD SNDQNIEAGN QVNTLSHHLS LPRKSSEMFV VENLLQFPDS VPSSIRAKRG 180 FATHPRSVAE RVRRTRISER MRKLQELVPN IDKQTCTSDM LELAVDYIND LQKQLKIMTA 240 KRAKCRCRNQ K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4955

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC141114	3e-89	AC141114.14 Medicago truncatula clone mth2-8g20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003625199.1	1e-133	transcription factor bHLH130
Swissprot	Q66GR3	3e-52	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2K3NYB0	0.0	A0A2K3NYB0_TRIPR; Transcription factor bHLH130-like protein
STRING	AES81417	1e-133	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4955

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]