PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5032

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 160aa MW: 17789.3 Da PI: 8.9703

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5032	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.8	4.3e-16	12	53	4	45
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++k r+v fskR+ng++KKA+ LS+LC+a+v v f + gk Tp57577_TGAC_v2_mRNA5032 12 KDKDARYVAFSKRKNGLFKKASQLSTLCNARVGVFGFTPGGK 53 78999****************************999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.469	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-25	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-22	2	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-19	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGRRKIEMEY LKDKDARYVA FSKRKNGLFK KASQLSTLCN ARVGVFGFTP GGKPFAFGSP 60 TFQAVTNEYL NEGKGESSNQ NVAENSENEN LISLNEQLMD VTKELKEVAI TKDKKGKVPN 120 ISYDDLDLEE LQKVKARLKE LHGDIEAASS MLILAKEPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5032

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457349.1	2e-60	agamous-like MADS-box protein AGL29
TrEMBL	A0A2K3LNY3	1e-112	A0A2K3LNY3_TRIPR; Agamous-like mads-box protein agl61-like
STRING	XP_004504915.1	3e-36	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2424	29	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	2e-30	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5032