PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5150
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 411aa    MW: 45943.1 Da    PI: 4.8097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5150genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058426123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              +kC+ C +sFs+   L  H+r+H
  Tp57577_TGAC_v2_mRNA5150  4 HKCKLCFRSFSNGKALGGHMRSH 26
                              79********************9 PP
2zf-C2H212.70.00037234256123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC  C+k+F++   L  H  +H
  Tp57577_TGAC_v2_mRNA5150 234 YKCDTCNKVFRSYQALGGHRASH 256
                               9***********99999998887 PP
3zf-C2H211.40.00099298320123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C + Fs+   L  H rtH
  Tp57577_TGAC_v2_mRNA5150 298 HECPICFREFSSGQALGGHKRTH 320
                               79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.49E-5331No hitNo description
SMARTSM003550.063426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PfamPF139124.0E-7427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139126.7E-13233258IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-7233256No hitNo description
SMARTSM003550.014234256IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305234261IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-7293320No hitNo description
SMARTSM003550.23298320IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-10298320IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432298320IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEKHKCKLCF RSFSNGKALG GHMRSHMMNL PIPPKQNNSP PPPPPMIQLS FEADSGSSPS  60
SSSFYGLREN PKRSFRFTDP NQIIDGGSII LQEDGDSEIE SSKNPTGRRS KRVKKIDPMK  120
TSIQNNESVL SSSSDITTEE DIAFCLMMLS RHNNNNNNNW KTQHQNHQYQ EQQNHHYHQY  180
QEEEEEEEQQ FNQYLEEDEE EDEDVEEEEE EESEAESEEE EEELKPLKKV RGRYKCDTCN  240
KVFRSYQALG GHRASHKKNM KLLAENGGDS ISNHHDHKNK IENNNVIVNH NNVEKRIHEC  300
PICFREFSSG QALGGHKRTH GIGIGNGIGS SAPAPAPAPP AVATTATAVT TTNVPTTSTV  360
NVEVVRRSTA NFGDNLIDLN LPADMDEDDD GDDVSQIEGS AVSDAEFVKP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455142.11e-119zinc finger protein ZAT9
TrEMBLA0A2K3PKM70.0A0A2K3PKM7_TRIPR; Zinc finger protein ZAT9-like
STRINGXP_004506485.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-23C2H2-like zinc finger protein