PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5571

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25681.1 Da PI: 9.447

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5571	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.8e-18	99	153	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq ++Le+ F+ +++++ +++ LA++l+L++rq+ vWFqNrRa+ k Tp57577_TGAC_v2_mRNA5571 99 RKKLRLTKEQSTILENTFKLHNTLNPVQKQSLADQLNLKTRQIEVWFQNRRARTK 153 78889************************************************98 PP
2	HD-ZIP_I/II	112.6	2.6e-36	99	186	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +kk+rl+keq+++LE++F+ +++L+p +K++la +L+l++rq++vWFqnrRARtk+kq+E+dye Lk+++++l++en+rL+ke + Tp57577_TGAC_v2_mRNA5571 99 RKKLRLTKEQSTILENTFKLHNTLNPVQKQSLADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKHCQNLSDENRRLKKELQ 183 69*********************************************************************************** PP HD-ZIP_I/II 86 eLr 88 eL+ Tp57577_TGAC_v2_mRNA5571 184 ELK 186 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.12E-18	77	156	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-17	82	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	95	155	IPR001356	Homeobox domain
SMART	SM00389	8.5E-15	97	159	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-15	99	153	IPR001356	Homeobox domain
CDD	cd00086	8.21E-13	99	156	No hit	No description
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
SMART	SM00340	4.3E-11	155	197	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.6E-8	155	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEESDHEECN TGLCLGLGGG HVAKKEKKQK LVNKPLMACF DLAFEISPKG EAMNIYNNHS 60 NIKKGERLSL ERQQNYPNVT YSTDSENNNN NNNNNNDSRK KLRLTKEQST ILENTFKLHN 120 TLNPVQKQSL ADQLNLKTRQ IEVWFQNRRA RTKLKQTEVD YELLKKHCQN LSDENRRLKK 180 ELQELKLVQS PLCPQRTPSK PKMCSSCDHK LFKLNELENN N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	103	SRKKLRL
2	147	155	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5571

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003610006.1	5e-92	homeobox-leucine zipper protein HAT22
Swissprot	P46602	3e-42	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A2K3NHU0	1e-159	A0A2K3NHU0_TRIPR; Homeobox-leucine zipper protein HAT14-like
STRING	AES92203	2e-91	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5664	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-37	homeobox protein 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5571

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]