PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5818

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 378aa MW: 40444.5 Da PI: 9.139

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5818	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.6e-38	82	140	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s Tp57577_TGAC_v2_mRNA5818 82 EAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRS 140 7789*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	65	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	84	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MAFTSIQAAY LDAANWQQHE QQQNHLQHPG NSSSVSQQLF QTPPPAPPQT ESQPHGGATT 60 GGSIRPGSMT DKARTANMPM PEAALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT 120 RGGALRNVPV GGGFRRNKRS GKSSNNGNST KSPASSDRQT GSASSTTSIT SNNNHSSADI 180 LGLTPQMSSL RFMTPLHHNF NNPNDYGGGD LGLNYGFSYM GGGGGGGDLG SALVGGNGNS 240 ILSSSALEQW RMPMPMPMPM PQQHHQFPFL ANLEGSNGNL YPFEGNVQNH EMITSGGYVR 300 PKVSSTSGIM TQLASVKMEE SINRGFLGIN TINNNSNQGS EQYWNSAVVI GGNSSAANWN 360 DHVSGFSSSS NTTSNQM*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MAFTSIQAAY LDAANWQQHE QQQNHLQHPG NSSSVSQQLF QTPPPAPPQT ESQPHGGATT  60
GGSIRPGSMT DKARTANMPM PEAALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT  120
RGGALRNVPV GGGFRRNKRS GKSSNNGNST KSPASSDRQT GSASSTTSIT SNNNHSSADI  180
LGLTPQMSSL RFMTPLHHNF NNPNDYGGGD LGLNYGFSYM GGGGGGGDLG SALVGGNGNS  240
ILSSSALEQW RMPMPMPMPM PQQHHQFPFL ANLEGSNGNL YPFEGNVQNH EMITSGGYVR  300
PKVSSTSGIM TQLASVKMEE SINRGFLGIN TINNNSNQGS EQYWNSAVVI GGNSSAANWN  360
DHVSGFSSSS NTTSNQM*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5818

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003604971.2	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A2K3LLM3	0.0	A0A2K3LLM3_TRIPR; Dof zinc finger protein
STRING	AES87168	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-39	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5818