PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5832
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 672aa    MW: 74550.1 Da    PI: 7.1322
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5832genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24123223198
                               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                               f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++
  Tp57577_TGAC_v2_mRNA5832 123 FCKILTASDTSTHGGFSVLRKHATEClppldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTF 207
                               99*****************************77777888********************************************** PP

                               EEEE-SSSEE..EEEEE- CS
                        B3  81 vFkldgrsefelvvkvfr 98 
                               vF   + +++el+v+v+r
  Tp57577_TGAC_v2_mRNA5832 208 VFL--RGENGELRVGVRR 223
                               ***..449999*****98 PP
2Auxin_resp100.12.9e-33249330183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               a+ha+++++ F v+Y+Pr+  s+F+v+v+k+++a+++k++vGmRfkm+fe++ds+e  +r+sGt++gv d++p +WpnSkWrsLk
  Tp57577_TGAC_v2_mRNA5832 249 ASHAVASQTLFVVYYKPRT--SQFIVSVNKYLAAVNNKYTVGMRFKMRFESDDSAEsdKRFSGTIIGVADMSP-HWPNSKWRSLK 330
                               689***************6..9*******************************97633678************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-39112252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-41114238IPR015300DNA-binding pseudobarrel domain
CDDcd100177.15E-21121223No hitNo description
SMARTSM010194.1E-23123225IPR003340B3 DNA binding domain
PfamPF023622.9E-22123223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308123225IPR003340B3 DNA binding domain
PfamPF065075.6E-31249330IPR010525Auxin response factor
PfamPF023094.0E-6539595IPR033389AUX/IAA domain
PROSITE profilePS5174526.311559640IPR000270PB1 domain
SuperFamilySSF542772.16E-11560635No hitNo description
PfamPF023098.2E-6606643IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MMLNCSSNVS AEAVGGCSNE ELWKACAGPL VDVPRTGQRV LYFPQGHMEQ LEASTNQELN  60
QNIPLLKLPT QILCRIVNMN LLAEQETDEV YAQITLVPEP NQDEPTIPDP VADEPPRPKI  120
HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMSQPTPT QELVAKDLHG YEWRFKHIFR  180
GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELRVG VRRLARQSSS MSSSVISSQS  240
MHLGVLATAS HAVASQTLFV VYYKPRTSQF IVSVNKYLAA VNNKYTVGMR FKMRFESDDS  300
AESDKRFSGT IIGVADMSPH WPNSKWRSLK VQWDEPAAIS RPDRVSPWEI EPFVSSASTP  360
SVQPTTVKTK RPRPPSEIPD VDTTSAASIY RDARLTPTDK TQRSVLAESQ KSDNTGLWHL  420
KKTDTMNSKS NSNTLFRNHT EGSWLSSPRS SCPSHLLHDT TDDRVHDQVD KDNKAETATS  480
YRLFGIDLID HSKNPAALGK GSSHVANITG VTTEVSSSTL SSIDTGRKSD ISKAVSMEKK  540
QELQLVSPKE PQSKQICSRS RTKVQMQGVA VGRAVDLATL NGYDQLIGEL EELFDIKGQL  600
QHRNIWEIVF TDDEGDMMLV GDDPWPEFCN MVRRIFICSS QDVKKMKTGS KLPINSSIEE  660
GTVISSDTTQ T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16663553357Auxin response factor 1
4ldw_A1e-16663553357Auxin response factor 1
4ldw_B1e-16663553357Auxin response factor 1
4ldx_A1e-16663553357Auxin response factor 1
4ldx_B1e-16663553357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604938.20.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2K3PCI60.0A0A2K3PCI6_TRIPR; Auxin response factor
STRINGAES871350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9