PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5882
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 471aa    MW: 53540.9 Da    PI: 5.3797
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5882genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.56.4e-31451562103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT..EEE---SSBTTTT........XT CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg..Fkkvkdeekksks........ke 76 
                               Fl+k++++++d++l+ +isw++ng sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+Y   F+++  + +++ +        ++
  Tp57577_TGAC_v2_mRNA5882  45 FLSKTFDLVDDPSLNPIISWNSNGVSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYVgiFERLLLSLSRDFHlskgfrkiDT 129
                               9**********************************************************54588776665554446666665449 PP

                               TSEEEEESXXXXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  77 kiweFkhksFkkgkkellekikrkkse 103
                               + weF ++ F+kgkk+ll++i+r++s+
  Tp57577_TGAC_v2_mRNA5882 130 DKWEFFNEGFQKGKKHLLKNIQRRRSS 156
                               ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.63E-3140153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-4441153IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3342153IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-124568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-2845153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-128395IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1296108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNPNHEKISP KFSSPLSSPS MVEVEASLSP VPMECLQLNN PVPPFLSKTF DLVDDPSLNP  60
IISWNSNGVS FVVWDPLEFA RIVLPRHFKH NNFSSFVRQL NTYVGIFERL LLSLSRDFHL  120
SKGFRKIDTD KWEFFNEGFQ KGKKHLLKNI QRRRSSPSQQ VGNYVGSSSD AGKSGVEVEI  180
ERLRKERSVL MQEVVDLQQQ QRMTASHAGN VNQRLQSAEQ RQKQMVSFLA KLFSNPDFLA  240
RLKQKKEQKD IESPRVRRKF VKQNQNEEEN LKDGKIVRYQ PNWENINMSC ETQELSHVSV  300
EHSPHYFSHD LAKDIGVEDF TSQIENISLD KYAAMHENIS SNSETIIGEG SSSFGFDEPF  360
SKGKNVISPN EVVIPENFKG FQEFQSIGTE NIIKQEDIWD PNFNIGVTTT SSCGNEMWGN  420
PINYGVPDFG VMSETDMWDI GFGSLGIDKW PADESPFDEI DSQGGKPKYD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-204215817125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239247ARLKQKKEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468064.10.0heat stress transcription factor A-3 isoform X2
TrEMBLA0A2K3PKB20.0A0A2K3PKB2_TRIPR; Heat stress transcription factor a-3-like protein
STRINGXP_004497602.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-95heat shock transcription factor A3