PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5925
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 194aa    MW: 22884.5 Da    PI: 9.8339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5925genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.64.4e-31171421128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                               lp+GfrF+P d+ lv++yLk kv +++l++ ++i+e+d++++ePw Lp  + + +++++yfF  r+++ ++    +r++ +g W+
  Tp57577_TGAC_v2_mRNA5925  17 LPVGFRFDPIDDILVNFYLKLKVYNQPLPF-HAIQEFDVFQTEPWMLPyDRNSFKDRKYYFFDIRNRRFQN--MDTRVAGNGEWR 98 
                               79****************************.88***************54555688999****99999875..789999****** PP

                       NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +  k+ke++  ++  +g k+tLv+++ + ++ +kt+Wvmhe+r+
  Tp57577_TGAC_v2_mRNA5925  99 TVEKNKELVLPSNYFIGRKNTLVYWRIQGNEVVKTQWVMHEFRI 142
                               **********9999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3112147IPR003441NAC domain
PROSITE profilePS5100533.8217162IPR003441NAC domain
PfamPF023651.1E-1618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAIHKYVAYD LDGCPKLPVG FRFDPIDDIL VNFYLKLKVY NQPLPFHAIQ EFDVFQTEPW  60
MLPYDRNSFK DRKYYFFDIR NRRFQNMDTR VAGNGEWRTV EKNKELVLPS NYFIGRKNTL  120
VYWRIQGNEV VKTQWVMHEF RIGTIFHPIK VTTLGAYRIF KMKVAKVEKK VNIPTMIDFT  180
MEDASSSAPP PSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-251714215140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5925
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449453.13e-81NAC domain-containing protein 83
TrEMBLA0A2K3NF811e-138A0A2K3NF81_TRIPR; NAC domain-containing protein (Fragment)
STRINGXP_004492996.19e-80(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-27NAC domain containing protein 47