PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5952

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

ERF

Protein Properties

Length: 82aa MW: 9007.38 Da PI: 10.8513

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5952	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.1	5e-09	39	70	16	49
AP2 16 vAeIrdpseng.kr.krfslgkfgtaeeAakaaiaa 49 +AeIr ++ +r++lg+f t eeAa+a++ a Tp57577_TGAC_v2_mRNA5952 39 RAEIRS----SaRHgARVWLGTFNTIEEAARAYDCA 70 599999....33235******************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	11.416	24	81	IPR001471	AP2/ERF domain
SMART	SM00380	0.0022	31	78	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-10	37	74	IPR016177	DNA-binding domain
Pfam	PF00847	3.5E-6	39	70	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.8E-13	40	74	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
LKVVVIVVCR SRMLPQILSS SDQSAVGDLA RKGHPTNKRA EIRSSARHGA RVWLGTFNTI 60 EEAARAYDCA GFHLNYNVRK I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5952

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	7e-13	ERF family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5952