PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA602

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 178aa MW: 20844.2 Da PI: 7.8751

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA602	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.9	7.1e-23	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 kfY+ +Ak+ GFsvrk + ++ r++++ ++tf Cs+eg+r+++ + ++++r+++++tr+gC ak +v+ + + kw+vt +e e Tp57577_TGAC_v2_mRNA602 76 KFYCWFAKMSGFSVRKGHVIRN-RERHVLQQTFLCSREGFRHSQGLNpEDRQRQQKNTTRCGCMAKCRVHIDIrSRKWYVTVFEFE 160 6******************9.5556************99987888999999**99999998887******** PP FAR1 85 HnHela 90 HnHel Tp57577_TGAC_v2_mRNA602 161 HNHELL 166 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-21	76	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
IGXXXXXXXX XSYMSSPEHD SNSNEYGSEH DAGSYTAEED TVVIRDMADI KKISLENFHL 60 TDISKYEFAS LDVAYKFYCW FAKMSGFSVR KGHVIRNRER HVLQQTFLCS REGFRHSQGL 120 NPEDRQRQQK NTTRCGCMAK CRVHIDIRSR KWYVTVFEFE HNHELLNGTM CGFLPAYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA602

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3KM05	8e-65	A0A2K3KM05_TRIPR; FAR1 DNA-binding domain protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-16	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA602