PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6061
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 347aa    MW: 39166.2 Da    PI: 9.4778
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6061genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35e-5281421128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtd el+ +yL+kk+++ +l++ ++i+evdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWka
  Tp57577_TGAC_v2_mRNA6061   8 LPPGFRFHPTDAELILHYLRKKIASIPLPV-SIIAEVDIYKLDPWDLPAKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKA 91 
                               79****************************.89***************8878899****************************** PP

                       NAM  86 tgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk+++++        k++ +g+kk Lvfykg+ pkg kt+W+mheyrl
  Tp57577_TGAC_v2_mRNA6061  92 TGTDKTIVASlpigggraKENIIGVKKALVFYKGKPPKGIKTNWIMHEYRL 142
                               *********99**998877788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-644169IPR003441NAC domain
PROSITE profilePS5100560.9538169IPR003441NAC domain
PfamPF023654.2E-279142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
METPQTNLPP GFRFHPTDAE LILHYLRKKI ASIPLPVSII AEVDIYKLDP WDLPAKALFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA SLPIGGGRAK ENIIGVKKAL  120
VFYKGKPPKG IKTNWIMHEY RLVDNNKPIK LKDSSMRLDD WVLCRIYKKS KCALTSSESS  180
SETMVGNVEH AEDPAQFKET LFPITKNNTT SPYQNNLISQ KSVSFSNLLD AMDYSMLSSF  240
LSENHSNPSG IGSSSSFNTE NFNQQQSSQI NTSNNYMSQN KNPQLNTLKH QLSNIDEDNT  300
SLYPSKKYLS SSCNFPNINS QYENYLMKQS LMNQQLILGP HHQYQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-73517317172NAC domain-containing protein 19
3swm_B8e-73517317172NAC domain-containing protein 19
3swm_C8e-73517317172NAC domain-containing protein 19
3swm_D8e-73517317172NAC domain-containing protein 19
3swp_A8e-73517317172NAC domain-containing protein 19
3swp_B8e-73517317172NAC domain-containing protein 19
3swp_C8e-73517317172NAC domain-containing protein 19
3swp_D8e-73517317172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6061
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1457531e-149AC145753.1 Genomic sequence for Medicago truncatula, clone MTABa0058M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624592.10.0NAC transcription factor 47
SwissprotQ84TD61e-107NAC47_ARATH; NAC transcription factor 47
TrEMBLG7KZD30.0G7KZD3_MEDTR; NAC transcription factor-like protein
STRINGAES808100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-103NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]