PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6101

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 397aa MW: 45656 Da PI: 8.3966

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6101	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.3e-56	17	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtd e++v+yL++kv+++k+++ ++i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat sgyWka Tp57577_TGAC_v2_mRNA6101 17 LPPGFRFHPTDAEIIVFYLTEKVKNSKFSA-TAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATVSGYWKA 100 79************************99.88***********99999**************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke+++k k++lvg+kktLvfy+grapkgekt+Wvmhe+rle Tp57577_TGAC_v2_mRNA6101 101 TGKDKEIYHKgKSNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 145 *****977788*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-59	14	177	IPR003441	NAC domain
PROSITE profile	PS51005	56.866	17	177	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MEEPIVVNKG EDQVLDLPPG FRFHPTDAEI IVFYLTEKVK NSKFSATAIG EADLNKCEPW 60 DLPKKAKMGE KEWYFFCQKD RKYPTGMRTN RATVSGYWKA TGKDKEIYHK GKSNLVGMKK 120 TLVFYRGRAP KGEKTNWVMH EFRLEGKFAT HNLPKAEKVT INKLRRDEWV VSRVFHKNTD 180 VKKPQISGLL RINSIGHDDL LDYSSLPPLM DPSYTNDDFK GITNQQISST KSQPDGYYLP 240 SFSINNQQNQ FVMKPEDNYH RIINYDNHHH HHHEINPTMN NYTLNSNSNS NQTNLNNPIG 300 NTLSQPQIRI QNPNLNYFMY QNRINQSSIP TTTFGNNNEC KMEQFSSNQS QDTGLSNDTS 360 SAVSKQDMGR NRTMYEDLEG PSSVAPLSDL ESFWDY*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MEEPIVVNKG EDQVLDLPPG FRFHPTDAEI IVFYLTEKVK NSKFSATAIG EADLNKCEPW  60
DLPKKAKMGE KEWYFFCQKD RKYPTGMRTN RATVSGYWKA TGKDKEIYHK GKSNLVGMKK  120
TLVFYRGRAP KGEKTNWVMH EFRLEGKFAT HNLPKAEKVT INKLRRDEWV VSRVFHKNTD  180
VKKPQISGLL RINSIGHDDL LDYSSLPPLM DPSYTNDDFK GITNQQISST KSQPDGYYLP  240
SFSINNQQNQ FVMKPEDNYH RIINYDNHHH HHHEINPTMN NYTLNSNSNS NQTNLNNPIG  300
NTLSQPQIRI QNPNLNYFMY QNRINQSSIP TTTFGNNNEC KMEQFSSNQS QDTGLSNDTS  360
SAVSKQDMGR NRTMYEDLEG PSSVAPLSDL ESFWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	15	183	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	15	183	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	15	183	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	15	183	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	15	183	18	174	NAC domain-containing protein 19
3swm_B	1e-51	15	183	18	174	NAC domain-containing protein 19
3swm_C	1e-51	15	183	18	174	NAC domain-containing protein 19
3swm_D	1e-51	15	183	18	174	NAC domain-containing protein 19
3swp_A	1e-51	15	183	18	174	NAC domain-containing protein 19
3swp_B	1e-51	15	183	18	174	NAC domain-containing protein 19
3swp_C	1e-51	15	183	18	174	NAC domain-containing protein 19
3swp_D	1e-51	15	183	18	174	NAC domain-containing protein 19
4dul_A	2e-51	15	183	15	171	NAC domain-containing protein 19
4dul_B	2e-51	15	183	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6101

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT141263	0.0	BT141263.1 Medicago truncatula clone JCVI-FLMt-18I13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003624598.1	0.0	NAC domain-containing protein 87
Swissprot	Q9FK44	1e-104	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2Z6MRH0	0.0	A0A2Z6MRH0_TRISU; Uncharacterized protein
STRING	AES80816	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-97	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6101

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]