PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6103

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 197aa MW: 22935.3 Da PI: 10.9997

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6103	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2.1e-20	40	124	8	91
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 k++GF +r+++ +ksk++g t+r+f+C ke r +k+++ + +r+raetrt+C+a++++++++ gk++v +++ +H H+l+p Tp57577_TGAC_v2_mRNA6103 40 KKLGFGIRREYVNKSKKDGVLTSRKFTCFKEDIRGVDKSRQPTGERNRAETRTDCQARMVIRLDRkIGKYKVVDFVAKHDHPLQP 124 689********************************999999****************9989*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-17	40	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
LSQHHSPPSP LFVSTSTARC HPLYPFRRRR RHFHSFSKCK KLGFGIRREY VNKSKKDGVL 60 TSRKFTCFKE DIRGVDKSRQ PTGERNRAET RTDCQARMVI RLDRKIGKYK VVDFVAKHDH 120 PLQPQKYVHM IRSNRRISEA QATQIVLGDQ SGLRPKGLHE YIYISKQAGG LETMEKRENS 180 GRLQIEKREN GIDYRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6103

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024629982.1	2e-63	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027191736.1	5e-62	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K3NJ06	2e-64	A0A2K3NJ06_TRIPR; Protein FAR1-related sequence 5-like
STRING	XP_004503202.1	3e-61	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15115	2	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-13	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6103