PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6171
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 160aa    MW: 17990.3 Da    PI: 9.8335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6171genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000263052123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              +kC  CgksF     L  H ++H
  Tp57577_TGAC_v2_mRNA6171 30 FKCDLCGKSFCYGNALSGHKSSH 52
                              89*****************9998 PP
2zf-C2H2140.0001595115323
                               ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                               C++C+k F+++  L+ H+r+H
  Tp57577_TGAC_v2_mRNA6171  95 CQICKKFFPSNKALHGHMRSH 115
                               77******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-42853IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.6E-62867No hitNo description
PfamPF139122.4E-73055IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2583057IPR007087Zinc finger, C2H2
SMARTSM003550.0723052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-575121No hitNo description
PROSITE profilePS501579.18292120IPR007087Zinc finger, C2H2
SMARTSM003551.193115IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-694117IPR007087Zinc finger, C2H2
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRKKSIPSCS FHNPVSSINH ANLQGLTRMF KCDLCGKSFC YGNALSGHKS SHKKQKTHHH  60
DAINKGTTIN ITWSLSSSSS SPHHDDNEKQ EHSCCQICKK FFPSNKALHG HMRSHKRDVK  120
KVIHPSPTTS SLEHNNDVDE DRFLLRASVI DLSKYFPQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LXB11e-102A0A2K3LXB1_TRIPR; C2H2 zinc finger protein