PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6179

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

ZF-HD

Protein Properties

Length: 294aa MW: 32402.5 Da PI: 6.5622

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6179	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.2	1.5e-31	205	260	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAa++Gg+a+DGCgEfmps ge+gt++al+C+AC CHRnFHR+eve Tp57577_TGAC_v2_mRNA6179 205 VVRYRECLKNHAAAMGGNATDGCGEFMPS-GEQGTIEALNCSACHCHRNFHRKEVEG 260 79************************9.999*******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.8E-28	206	258	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-30	207	258	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.155	208	257	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-22	210	261	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MELSSSQDGD IPIPIINNTD NNYGVSSNGH AQHHMLHHHH HHVHDHPPTL HHNHNHGNII 60 ISSSSTAAAV PVAVVPQNPS INGTTTTTTS MQAAVSGVEL DHDHSSYKKS SSSSVVRXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 MQAAVSGVEL DHDHSSYKKS SSSSVVRYRE CLKNHAAAMG GNATDGCGEF MPSGEQGTIE 240 ALNCSACHCH RNFHRKEVEG DSTEEDSYYH HNHNXLQQAA PPPQHEEIHV TSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6179

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF767894	2e-37	JF767894.1 Trifolium alexandrinum microsatellite TaSSR397 sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-29	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6179