PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6225
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 321aa    MW: 36070.1 Da    PI: 10.1389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6225genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.9e-153281256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                               ykGVr++  +g+Wv+eIr ps+   ++r++lg+f  +++Aa a++ a+++++ge
  Tp57577_TGAC_v2_mRNA6225 32 IYKGVRQR--NGKWVCEIRQPSN---KTRVWLGTFSHPDMAAIAYDVAALAFKGE 81
                              69***975..6*********965...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-93181IPR001471AP2/ERF domain
CDDcd000181.70E-273190No hitNo description
Gene3DG3DSA:3.30.730.104.3E-273290IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-183290IPR016177DNA-binding domain
PROSITE profilePS5103219.0583288IPR001471AP2/ERF domain
SMARTSM003802.5E-303294IPR001471AP2/ERF domain
PRINTSPR003672.5E-63344IPR001471AP2/ERF domain
PRINTSPR003672.5E-67090IPR001471AP2/ERF domain
SuperFamilySSF509786.6E-1598289IPR017986WD40-repeat-containing domain
SMARTSM0032030112151IPR001680WD40 repeat
PfamPF004000.25118151IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.5E-13120169IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202201236IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.5E-13205287IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM0032027241281IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
KLLDRWTHIF ITHKMNKRRA GRKKFHETRH PIYKGVRQRN GKWVCEIRQP SNKTRVWLGT  60
FSHPDMAAIA YDVAALAFKG EDASLNFPHS ASSLPRLNSR TSSIRSIQFA ATKAAEKHFS  120
SSMRITSVLW LKDQVSIATG GSKDTVPKIW DIRSLDRDVS PIGPLPQPAG QVGGNCAMKW  180
YCGRYCKDEN DTIFSVYTES SLQLQQRLEG ITSLSQDDRG TLLSASCKDN RIYLYNTLQL  240
ERGPLRSYEG GTLSSYMKAA ISPDALNIAS GSKEGNIYIS KVNKPHEQPT ILFPRAGENA  300
SLVDWFEYGI KIIQKWNKEV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6NLA23e-85A0A2Z6NLA2_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.15e-33C-repeat-binding factor 4