PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6230
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 146aa    MW: 15889.9 Da    PI: 8.0531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6230genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.0001111491255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Tp57577_TGAC_v2_mRNA6230 11 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 49
                              6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.007148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-7953No hitNo description
SuperFamilySSF474591.05E-10959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-81355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
QTTTQTTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEALSLPYL  60
NNGSGNTRQQ HSVQGEKNCL FPEDPGQLLN ENSLKRKAVE EVSQQEPKKD LKSRGLCLVP  120
VSCTLQVGSD NGADYWAPAL GGGFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1360550.0BT136055.1 Medicago truncatula clone JCVI-FLMt-17F9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453115.17e-94transcription factor bHLH68 isoform X2
SwissprotQ8S3D11e-68BH068_ARATH; Transcription factor bHLH68
TrEMBLI3S6F82e-92I3S6F8_MEDTR; BHLH transcription factor-like protein
STRINGAES850264e-94(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.15e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]