PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6246
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 267aa    MW: 30314.5 Da    PI: 9.5904
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6246genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.4e-17199233135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Tp57577_TGAC_v2_mRNA6246 199 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 233
                               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-15193247IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.279193229IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-14196256No hitNo description
Gene3DG3DSA:3.30.50.102.6E-13197231IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.21E-11198245No hitNo description
PfamPF003207.7E-15199233IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDICNNVSVS GEFQQEFSSL DDLFATHNKE VDIGMEWLSV FVEECFSSKP SCVIAPSSSN  60
VQIQTTTCTN TKPSNTMQKP QQQEQNQSYL QNFVVPGKAR SKRKRLSAPR TKIWSHNSHL  120
LSDAMSLDPP LLKQSYWLAD SELIVPKRKT EQKVVAVARR DTSIYQKKKR VKLEIKIENS  180
DDKNNCDDVD EHVPNARRCT HCLSQRTPQW RAGPLGPKTL CNACGVRYKS GRLLPEYRPA  240
KSPTFVSYLH SNSHKKVLEM RMQSIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172QKKKRVKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1417411e-122BT141741.1 Medicago truncatula clone JCVI-FLMt-15D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003619010.21e-146GATA transcription factor 9
TrEMBLG7KQ551e-145G7KQ55_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES752281e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-39GATA transcription factor 9