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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Tp57577_TGAC_v2_mRNA626 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family | LSD | ||||||||
| Protein Properties | Length: 83aa MW: 8984.7 Da PI: 8.5756 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 45.2 | 1.5e-14 | 15 | 39 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL YPrGA++V+CalC+t+
Tp57577_TGAC_v2_mRNA626 15 CSGCRNLLLYPRGASNVCCALCNTI 39
***********************97 PP
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| 2 | zf-LSD1 | 47 | 4.2e-15 | 54 | 77 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
CggCrtlL+Y rGA+sVRC++C+t
Tp57577_TGAC_v2_mRNA626 54 CGGCRTLLMYSRGATSVRCSCCNT 77
***********************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 1.7E-14 | 12 | 41 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 1.4E-12 | 15 | 39 | IPR005735 | Zinc finger, LSD1-type |
| TIGRFAMs | TIGR01053 | 1.7E-14 | 51 | 78 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 7.0E-13 | 54 | 77 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 83 aa Download sequence Send to blast |
MVESRLRAMR SHIMCSGCRN LLLYPRGASN VCCALCNTIT PVLPPGIEMS QLYCGGCRTL 60 LMYSRGATSV RCSCCNTLXX XX* |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Tp57577_TGAC_v2_mRNA626 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004488206.1 | 4e-41 | protein LSD1-like | ||||
| Refseq | XP_027189085.1 | 4e-41 | protein LSD1-like | ||||
| Swissprot | Q93ZB1 | 2e-29 | LOL1_ARATH; Protein LOL1 | ||||
| TrEMBL | A0A2K3P529 | 2e-42 | A0A2K3P529_TRIPR; Protein LSD1-like | ||||
| STRING | XP_004488206.1 | 1e-40 | (Cicer arietinum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4027 | 33 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G32540.1 | 5e-32 | lsd one like 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Tp57577_TGAC_v2_mRNA626 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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