PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6261
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 375aa    MW: 42774.9 Da    PI: 5.7279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6261genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1775.1e-55161431128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lp+GfrFhP+d+e++++yL +kv ++++++  +i e+d++k+ePwdLpkk+k +ek+wyfF++rd+ky+tg+r+nrat+sgyWka
  Tp57577_TGAC_v2_mRNA6261  16 LPAGFRFHPNDDEIITCYLINKVLNSTFSA-IAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKA 99 
                               799************************999.88***************99999******************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tgkdke+++  +++l+g+kktLvfykgrap+gekt+Wvmhe+rl
  Tp57577_TGAC_v2_mRNA6261 100 TGKDKEIYKGkSNQLIGMKKTLVFYKGRAPRGEKTNWVMHEFRL 143
                               ********9756677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6011168IPR003441NAC domain
PROSITE profilePS5100556.59616168IPR003441NAC domain
PfamPF023659.1E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEESIVLNKS DEALDLPAGF RFHPNDDEII TCYLINKVLN STFSAIAIGE ADLNKCEPWD  60
LPKKAKMGEK DWYFFCQRDR KYPTGTRTNR ATESGYWKAT GKDKEIYKGK SNQLIGMKKT  120
LVFYKGRAPR GEKTNWVMHE FRLDGKLATC NLPKDAKDEW VVSRIFNKNI NNEVKRTTSI  180
SNLLRINSIS DDLLDFSSLP PLVEPPFSNN TIIDHHDFKG TNSSPSSSNG YYFPSYLINN  240
EINHVTNQGN FNNPMQKSTF SSHQPQPQIQ IPKEPMNKNM LTNLYSYMNQ GNNNSNGYIY  300
GLENKECKME QFSTNNSMVS VSQDTCLSND INNDISSMVS KQENMGMDTT LYEELECPSS  360
IGPLSNFEYL WDNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-49101699169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003619003.10.0NAC domain-containing protein 87
SwissprotQ9FK441e-111NAC87_ARATH; NAC domain-containing protein 87
TrEMBLG7KQ480.0G7KQ48_MEDTR; NAC transcription factor-like protein
STRINGAES752210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-102Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]