PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6293
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 216aa    MW: 24764.2 Da    PI: 10.1974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6293genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.4e-2018109199
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               ffk+    + l+ g l++p+kf++++g  +  +k + l++++g +W+++l   k++g+++++kGWkeFv+ + L  g  +vFk++
  Tp57577_TGAC_v2_mRNA6293  18 FFKIICDQNLLE-GKLMMPRKFVQKYG--EGLTKIIYLKTPNGAKWKLNL--VKSDGKIWFEKGWKEFVEYHSLVHGHLIVFKYE 97 
                               556664444444.56999********8..447889***************..********************************* PP

                               SSSEE..EEEEE-S CS
                        B3  86 grsefelvvkvfrk 99 
                               ++s f   v++f+k
  Tp57577_TGAC_v2_mRNA6293  98 RNSHF--EVQIFDK 109
                               99999..9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2612112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2514112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-1817108No hitNo description
PROSITE profilePS5086314.45217110IPR003340B3 DNA binding domain
SMARTSM010191.3E-1818110IPR003340B3 DNA binding domain
PfamPF023623.0E-1719110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAMAMMANES PHVKPTHFFK IICDQNLLEG KLMMPRKFVQ KYGEGLTKII YLKTPNGAKW  60
KLNLVKSDGK IWFEKGWKEF VEYHSLVHGH LIVFKYERNS HFEVQIFDKN ACEIKYPFKR  120
FDGKRVFNGQ KKKANLSLEF HQPCEIGSSS GVRVGKLPKV ETLNHIDKKC KGKQLVIAKK  180
VTALDRAISF RTCNPSFHVV MCPSYIDGPC NLMIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6293
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515213e-73AC151521.2 Medicago truncatula chromosome 7 clone mte1-49d11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622663.15e-97B3 domain-containing transcription factor VRN1
TrEMBLA2Q2N61e-102A2Q2N6_MEDTR; Putative transcription factor B3-Domain family
STRINGAES788941e-100(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-25B3 family protein