PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6311

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 103aa MW: 12014.1 Da PI: 9.3125

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6311	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.5e-16	14	101	17	98
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +pk+f + h ++++++ ++ l+ ++gr+W +++ +r + gr + +kGWk F+++n+Lk+gD++ F+l + + +++v Tp57577_TGAC_v2_mRNA6311 14 NIPKEFGKIHlsDLDNKQ-GDIHLRLLNGRVWPLRYLIRINNGRvikyEMCSKGWKTFAEDNNLKVGDVCKFELLPTnTIVTFTV 97 59****8889655444.499999*********9988888866766788*******************885547777788 PP EEE- CS B3 95 kvfr 98 ++f+ Tp57577_TGAC_v2_mRNA6311 98 HIFK 101 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.632	1	102	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-8	5	99	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.9E-18	11	101	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.14E-19	12	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.2E-17	13	101	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.8E-15	15	101	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MNICIFIFFV AWQNIPKEFG KIHLSDLDNK QGDIHLRLLN GRVWPLRYLI RINNGRVIKY 60 EMCSKGWKTF AEDNNLKVGD VCKFELLPTN TIVTFTVHIF KD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6311

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024634792.1	2e-23	B3 domain-containing transcription factor VRN1
TrEMBL	A2Q2N5	4e-38	A2Q2N5_MEDTR; Transcriptional factor B3
STRING	AES78894	2e-36	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-07	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6311