PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6340
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 703aa    MW: 77803.2 Da    PI: 7.6558
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6340genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24111212199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD
  Tp57577_TGAC_v2_mRNA6340 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaAEPPVQ--TVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGD 193
                               89****************************996555555..8******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               +vvF   + +++el+v+++r+
  Tp57577_TGAC_v2_mRNA6340 194 SVVFL--RAENGELCVGIRRA 212
                               *****..449999******97 PP
2Auxin_resp118.36.4e-39282365183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               a++ a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Tp57577_TGAC_v2_mRNA6340 282 AVKLAANNQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPIRWPNSPWRLLQ 365
                               67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-37104214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-29105212IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-21110211No hitNo description
PROSITE profilePS5086313.183111213IPR003340B3 DNA binding domain
PfamPF023621.9E-22111212IPR003340B3 DNA binding domain
SMARTSM010194.3E-23111213IPR003340B3 DNA binding domain
PfamPF065071.3E-33282365IPR010525Auxin response factor
PROSITE profilePS5174517.133590670IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MKETEKGYLD PQLWHACAGG MVQIPQVNSK VYYFPQGHAE HANTNIDLRV SVPPLILCKV  60
VAVKFLADPE SDEVFAIIKL LPLRNSEFGY GEESCGGGGD GLENSEKPAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYAAEPPVQT VVAKDVHGEL WKFRHIYRGT PRRHLLTTGW  180
SSFVNQKKLV AGDSVVFLRA ENGELCVGIR RAKKGIGSGF DGSSCGWTSG SGSNNGNCGI  240
GPFGAFSFFL KEENKTSRNG FVGVDGNLSG RVRVRHEDVM EAVKLAANNQ PFEVVYYPRA  300
STPEFCVKAS SVRAAMRIQW CSGMRFKMPF ETEDSSRISW FMGTIASVQV VDPIRWPNSP  360
WRLLQVTWDE PDLLQNVKRV SPWLVELVSN VPVIHFSPFT PPRKKLRFPQ NLDFPLDVQF  420
PSPTFSGNQL GLNSPLFGLS DNAPACIQGA RHAQFGGISL SDLNLNNNKL QLGLFPTNIQ  480
HLDVRNRISN GNNMMTDNNK NKESLSCLLT IGKKSDKSLE KSQSDDDVVK KHQFCLFGQP  540
ILTEQQISRN CSEKDLVDES KDKEKWFLDA FSAGKGSDAT EFSWQLGLDI GHCKVFMESE  600
DVGRTLDLSL LGSYEELYKK LANMFDLEKS EMLNRVFYRD ATGAVKQTGE EPFSEFMKTA  660
KRLTILTDSG SKNVRGAWIT GTHKGEHGLN ASNKTGPLSI FA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-75438646388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2076007e-86AC207600.4 Medicago truncatula chromosome 2 BAC clone mth2-31i16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456002.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K3MNF40.0A0A2K3MNF4_TRIPR; Auxin response factor
STRINGXP_004506012.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]