PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6400
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 275aa    MW: 31127.5 Da    PI: 8.7715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6400genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.43.6e-08152173223
                               EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                C++Cgk F+r+ nL+ H+r H
  Tp57577_TGAC_v2_mRNA6400 152 FCEICGKGFTRNANLRMHMRAH 173
                               6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.6E-6150174No hitNo description
PROSITE profilePS5015712.092151178IPR007087Zinc finger, C2H2
SMARTSM003557.5E-4151173IPR015880Zinc finger, C2H2-like
PfamPF128748.2E-4152171No hitNo description
Gene3DG3DSA:3.30.160.603.6E-7153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SMARTSM00355150196229IPR015880Zinc finger, C2H2-like
SMARTSM00355190234255IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNMHNHTEIT QQTNNTNIPL HNLNELSTKM DSIQRYISQS INTNTLLPKH HLDTLSDQIS  60
TTIRQVIINA TALLATYPAT TTVKPTMCYK TCDENDALLT TCPATITDPP TNCYRIRGEN  120
NSCINDTVAN STIDSDVVEL DAVELLANHF HFCEICGKGF TRNANLRMHM RAHGDKFKTP  180
ESLRCGRETR LSATRFSCPF ESCKRNRLHK KFTPLKSVLC LRNHFKRSHC PKTHTCDRCR  240
KKSFALVSDL KSHVKQCKGE STWKCSCGTT PFYQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024627970.11e-125protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2K3NW191e-175A0A2K3NW19_TRIPR; Protein sensitive to proton rhizotoxicity 1-like
STRINGXP_004504082.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-50C2H2 family protein