PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6402
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 164aa    MW: 18188.5 Da    PI: 6.6675
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6402genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA467.3e-15740134
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                              C +Cg  +TplWR+gp+ ++ LCnaCG +yr+ g
  Tp57577_TGAC_v2_mRNA6402  7 CYHCGINSTPLWRQGPNDKPVLCNACGSRYRHWG 40
                              ****************99999**********866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-6153IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.42E-12545No hitNo description
CDDcd002026.86E-14641No hitNo description
PROSITE profilePS5011411.24740IPR000679Zinc finger, GATA-type
PfamPF003201.4E-12740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12738IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRSGPCYHC GINSTPLWRQ GPNDKPVLCN ACGSRYRHWG HLDNYFPRHS LPESEELVDD  60
SPPIDVSDSE NGTYAKSLIY LGENASDLLK SEIPSKKRSL RVVRKLKPMQ KFHAQLLNEL  120
KNQEIKGESS SEEALLFDNV NNFIPPNEIG LGAVLLKPDG TSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6402
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020204683.12e-49GATA transcription factor 27
TrEMBLA0A2K3NIP09e-49A0A2K3NIP0_TRIPR; GATA transcription factor
STRINGXP_004504176.11e-49(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.14e-23GATA transcription factor 27