PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6454
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35063.6 Da    PI: 4.5138
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6454genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1854107356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Tp57577_TGAC_v2_mRNA6454  54 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 107
                               456899***********************************************9 PP
2HD-ZIP_I/II130.37.9e-4253145193
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk ++++L++++e
  Tp57577_TGAC_v2_mRNA6454  53 QKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKAKYDALKLNHDNLQRDNE 137
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelke 93 
                               +L++e+ke
  Tp57577_TGAC_v2_mRNA6454 138 NLHKEVKE 145
                               *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1949111IPR009057Homeodomain-like
PROSITE profilePS5007117.45949109IPR001356Homeobox domain
SMARTSM003893.9E-1852113IPR001356Homeobox domain
CDDcd000864.59E-1653110No hitNo description
PfamPF000468.2E-1654107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-2056116IPR009057Homeodomain-like
PRINTSPR000318.5E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000318.5E-689105IPR000047Helix-turn-helix motif
PfamPF021832.8E-17109151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKRLGSSDSL GALMTTCPPP EEQSPRNNNV YGREFQSMLE GLDEEGCVEE PGQKKRRLSV  60
DQVKALEKNF EVENKLEPDR KVKLAQELGL QPRQVAVWFQ NRRARWKTKQ LERDYGVLKA  120
KYDALKLNHD NLQRDNENLH KEVKELKSRL QLQEENTTTE SDVCVKQELL TMQESENTNS  180
DETAILRSDS KDLNYDDCFK GDVVASLFPA DFKDGSSDSD SSAILNEENN SPNAAISSSG  240
VLQNHNFFMS PGSSSLKFNC SESSSPSSMS SFQFQTQYVK MEEHNFLGTD ETCDFFSDEQ  300
PPTLQWWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6454
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0507891e-137BT050789.1 Medicago truncatula clone MTYF5_F6_F7_F81G-J-3 unknown mRNA.
GenBankBT1337231e-137BT133723.1 Medicago truncatula clone JCVI-FLMt-17N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446755.10.0homeobox-leucine zipper protein ATHB-6
SwissprotP466681e-74ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A2Z6M2N00.0A0A2Z6M2N0_TRISU; Uncharacterized protein
STRINGXP_004504111.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-76homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]