PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6823
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 409aa    MW: 46171.2 Da    PI: 5.5278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6823genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.8e-08314354954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r+RR+ri +++  L++++P       +K++ a++L +A +Y+k L
  Tp57577_TGAC_v2_mRNA6823 314 ARQRRERISERIRVLQKIVPGG-----TKMDTASMLDEAANYLKFL 354
                               69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.672305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-13311364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-11313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-5314354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-4327359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDSLSWNDDS QLVANIPILW NTQPQDLERD YSMSNPSSSV FNYQMQDMQK IQSEAETSWE  60
ETLIFQSYPS LSVNINTPNN YVPDFNMSHQ QNSKSTTTAT CSLESSLDCL LSATTNSNTD  120
TNSIQDDGIS MIFSDCKNRN SWNFNAVSSV EYESTNARNK DMQYPFKEIE ETLSQISSDK  180
GKIIDSNSKV HSTKRTKIDQ YDPYNYNFNI TQNSSSTEFG FKLISEKPPK SKKPRWDNKC  240
QGSSNINFQQ PNSSMSLSNS SIHEEPDPEA IAQMKEMIYR AAAFRPVMNL GLEAVEKPKR  300
KNVKISNDPQ TVAARQRRER ISERIRVLQK IVPGGTKMDT ASMLDEAANY LKFLRSQVKA  360
LENLGNKIDT MKNCPSTSIA FSSNPSNSMQ STHFPIQNPN DNIQYSQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314319RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6823
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253900.0AC125390.32 Medicago truncatula clone mth2-17c11, complete sequence.
GenBankAC1874660.0AC187466.2 Medicago truncatula chromosome 2 BAC clone mth2-69p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597642.10.0transcription factor bHLH87
TrEMBLA0A2Z6LH910.0A0A2Z6LH91_TRISU; Uncharacterized protein
STRINGAES678930.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-65bHLH family protein