PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6860
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 226aa    MW: 25276.5 Da    PI: 9.0613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6860genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-1955110155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr++  +++Wv+e r p++n+  +  r++lg++ t+e+Aa+a++ a++ l+g
  Tp57577_TGAC_v2_mRNA6860  55 PVYRGVRRRN-NNKWVCEMRIPNKNNkSNkSRIWLGTYTTPEMAARAHDVAALTLKG 110
                               68*****887.8*********999776446***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1455110IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1856120IPR016177DNA-binding domain
PROSITE profilePS5103221.10156118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2756120IPR001471AP2/ERF domain
SMARTSM003807.0E-2456124IPR001471AP2/ERF domain
PRINTSPR003672.6E-75768IPR001471AP2/ERF domain
CDDcd000183.49E-2457120No hitNo description
PRINTSPR003672.6E-784100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNFFLSSFGE YYSDTSSSSE TTSSNRISSS SEVILASTKP KKKAGRRVFK ETRHPVYRGV  60
RRRNNNKWVC EMRIPNKNNK SNKSRIWLGT YTTPEMAARA HDVAALTLKG KSACLNFADS  120
AWKLRLPESN DAVEIRRAAM EAAKLFAVED GVVVDDDMVD SKKNVLEVQI PAVSSEFEDF  180
NNLLLSIANE PLRSLPTSPI NYGGTSNWGD MEMFDTQISL WNFSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6860
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465731e-119AC146573.21 Medicago truncatula clone mth2-145j1, complete sequence.
GenBankBT1455201e-119BT145520.1 Medicago truncatula clone JCVI-FLMt-4G19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611158.11e-119dehydration-responsive element-binding protein 1E
SwissprotQ9LN861e-54DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A2K3NJ741e-135A0A2K3NJ74_TRIPR; Dehydration-responsive element-binding protein 1f
STRINGAES941161e-119(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.22e-55ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]