PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6888
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 300aa    MW: 32753.3 Da    PI: 5.8069
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6888genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.1e-36251152101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++l+sw+e+g+sf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F
  Tp57577_TGAC_v2_mRNA6888  25 FLTKTYQLVDDPSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGF 100
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                               ++g+k+ll++i+r+k
  Tp57577_TGAC_v2_mRNA6888 101 RRGEKNLLRDIQRRK 115
                               *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-3915108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MATLPVEQTG ESPTAESQRS IPTPFLTKTY QLVDDPSVDD LVSWNEDGTS FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDGF RRGEKNLLRD IQRRKILPAA  120
GTAMATAVAA ANTVTVAMAA PVRMVSPTTS GDEQVVSSNS SPIVAHNSTT VHRSTSCTTA  180
PELFEENERL KKENMQLSNE LSQLRGLCNN ILSMMSNYAS GFSGQLESST SAPTARAVLV  240
KEGKALELLP RSVLLAEEPV AVNAGGAAGG MPCEMTXXXX XXXXXXXXXX XXXXXXXXX*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-271211417129Heat shock factor protein 1
5d5v_B9e-271211417129Heat shock factor protein 1
5d5v_D9e-271211417129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0531950.0BT053195.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA.
GenBankBT1411200.0BT141120.1 Medicago truncatula clone JCVI-FLMt-12D17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611134.11e-164heat stress transcription factor B-2b
RefseqXP_024640212.11e-164heat stress transcription factor B-2b
RefseqXP_024640213.11e-164heat stress transcription factor B-2b
SwissprotQ9T0D33e-85HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2K3N7N80.0A0A2K3N7N8_TRIPR; Heat stress transcription factor b-2b-like protein
STRINGAES940921e-164(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.19e-77HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]