PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6945
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 270aa    MW: 29858.1 Da    PI: 4.4816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6945genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2061112156
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                               ++y+GVr+++ +g+W+AeIrdps    r  r++lg+f taeeAa  +++a+ kl+g+
  Tp57577_TGAC_v2_mRNA6945  61 KKYRGVRQRP-WGKWAAEIRDPS----RgVRVWLGTFETAEEAAIVYDNAAIKLRGP 112
                               59********.**********84....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.90E-3561118No hitNo description
PROSITE profilePS5103223.81562119IPR001471AP2/ERF domain
SMARTSM003804.3E-3862125IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2262118IPR016177DNA-binding domain
PfamPF008476.8E-1362111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-3162118IPR001471AP2/ERF domain
PRINTSPR003674.0E-116374IPR001471AP2/ERF domain
PRINTSPR003674.0E-1185101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXNRTN GGGGKGGKAR APVSRQVYTG  60
KKYRGVRQRP WGKWAAEIRD PSRGVRVWLG TFETAEEAAI VYDNAAIKLR GPDALTNFIT  120
PPSTCQLSSP DNEQPPQQLP LPVTNSGYIS GEEESQSQSQ SQSQSQSHNN NKSLFSPKSV  180
LHPCSSSEEV AESESLFSIP SDILFDFQDS SPANDAFNSF NTLPENIFYA DMDCSEHFDF  240
GLESLHTHKD GDFFQDIDDL FGSDALLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2460118362ATERF1
3gcc_A1e-2460118362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621241e-63CR962124.2 Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611024.12e-92ethylene-responsive transcription factor CRF2
TrEMBLA0A2K3M2A01e-170A0A2K3M2A0_TRIPR; Ethylene-responsive transcription factor crf2-like protein
STRINGAES939828e-92(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-33cytokinin response factor 4