PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6992
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 402aa    MW: 45482.6 Da    PI: 4.913
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6992genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.2e-34131042102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+ye+++d++ + ++sws +++sfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F
  Tp57577_TGAC_v2_mRNA6992  13 FLAKTYEMVDDPSSDPIVSWSMSNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDF 88 
                               9********************999****************************************9998.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                kg+ +ll++i+r+k 
  Tp57577_TGAC_v2_mRNA6992  89 IKGQPHLLKNIHRRKP 104
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.21E-368102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-639102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDEAGSSSSL PPFLAKTYEM VDDPSSDPIV SWSMSNKSFV VWNPPEFARV LLPRFFKHNN  60
FSSFIRQLNT YGFRKVDPEQ WEFANDDFIK GQPHLLKNIH RRKPVHSHSL HNLQAQTPLS  120
ESERQNLNDE IEKLKQDREQ LVTEIKRYQH EFQTYEIQIH CSKDRLEKLE QKQQKMVSSV  180
SQVLQKPVNA VSLLSLTETM DRKRRLPARS GCVNNEASVE DAMETSVALT GENAEGSSIL  240
TLNTERLDQL ESSVLFWEII AQEVADSLVH THSNIDFDES TSCADSLSIS CRQIDVEVRP  300
KSPEIDMNAE PAAAAPETVA SKEQPVGITT AATGVNDVFW EQFLTEDPGA SEAQEVQSER  360
KDNNSRKNEG KPGDHGRFWW NMRKGNNLPE QMGNVGQVEK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23410220129Heat shock factor protein 1
5d5v_B1e-23410220129Heat shock factor protein 1
5d5v_D1e-23410220129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629847.10.0heat stress transcription factor A-4c
SwissprotO494031e-114HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2K3P3350.0A0A2K3P335_TRIPR; Heat stress transcription factor a-4a-like protein
STRINGAET043230.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-105heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]