PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7052
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 381aa    MW: 42826.1 Da    PI: 8.6539
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7052genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.13.9e-082462921763
                               HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               A+rsR RK+++i+eLe+ v++L+ae ++   ele l+++   l +e+
  Tp57577_TGAC_v2_mRNA7052 246 AQRSRVRKLQYIAELERNVQALQAEGTEVSAELEFLNQQNLILSMEN 292
                               89***********************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-4235294IPR004827Basic-leucine zipper domain
CDDcd147031.20E-15239285No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-5246289No hitNo description
SuperFamilySSF579598.75E-6246288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MANSKSSSGI RNLVYTGPGK HAHALLPPKS PFPTISQTYT DYVSNPTIGS KPVNKPREGN  60
SHHQRTSSES HLIEEQPSWL DDLLNEPDTP VRRGGHRRSS SDSFAYIDNI NASNIGYVDH  120
DEYKYKNFLS IPAWSPPEFD RNKDARHASM YAEMNLAKQK NRSWDSFSNA SGVPSGRDSV  180
AFQRSGSPTP STLYEADRIL PTANENHDSV ESGLQDIKSS FERKDGLHAK SSASETDSKR  240
AKQQFAQRSR VRKLQYIAEL ERNVQALQAE GTEVSAELEF LNQQNLILSM ENKALKQRLE  300
SLAQEQLIKY LEQEVLEREI GRLRSMYQQN LQQSHQPQQQ PSGSHRRSNS RDLDSQFANL  360
SLKHKDTNSG HDPANGALRI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1297150.0AC129715.48 Medicago truncatula clone mth2-36p23, complete sequence.
GenBankAC1530000.0AC153000.5 Medicago truncatula clone mth2-94c2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629951.10.0uncharacterized protein At4g06598
RefseqXP_024628502.10.0uncharacterized protein At4g06598
SwissprotQ8W3M71e-64Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A2Z6M8X30.0A0A2Z6M8X3_TRISU; Uncharacterized protein
STRINGAET044270.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51232637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-106bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]