PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7129

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 336aa MW: 38153.8 Da PI: 7.4822

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7129	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.7e-05	171	190	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Tp57577_TGAC_v2_mRNA7129 171 FSCPLCFKTFNRYNNMQMHM 190 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	171	198	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-5	171	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	173	193	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.17E-5	237	275	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-4	242	275	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSTHPYFSNN FNGYNTYFDL NNPPFYNFPS NYHQNNISFT SSPSSPPQRQ ALPLLNLSPT 60 KHHEDLLLQE SSFSCSSMEI MNMKEKEQQL SISSNSLDDD DAVTVALHLG LPSISSTDLA 120 SSNMYVDSEK DDEKVVTVAS SSSSECPLNK INRGQYWIPT PAQILIGPTQ FSCPLCFKTF 180 NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APECKNNIDH PRAKPLKDFR 240 TLQTHYKRKH GIKPFMCRKC CKAFAVRGDW RTHEKNCGKL WYCSCGSDFK HKRSLKDHIK 300 AFGNGHKAYG IDECLDQDDE HGGSEIEQEN ESFQS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00197	DAP	Transfer from AT1G51220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7129

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC161406	0.0	AC161406.8 Medicago truncatula chromosome 2 BAC clone mth2-83p17, complete sequence.
GenBank	AC233177	0.0	AC233177.2 Medicago truncatula strain A17 clone mth2-54k10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024631646.1	0.0	zinc finger protein WIP2-like
Swissprot	Q8W031	1e-127	ZWIP5_ARATH; Zinc finger protein WIP5
Swissprot	Q9SVY1	1e-126	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A396JHF9	0.0	A0A396JHF9_MEDTR; Putative transcription factor C2H2 family
STRING	AES67694	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-128	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7129

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]