PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7169
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 126aa    MW: 13863.4 Da    PI: 6.5036
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7169genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-093272348
                              -HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                              +W++Ia++++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA7169  3 RWSAIAAKLP-GRTDNEVKNFWHTHL 27
                              4*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.682131IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-13328IPR009057Homeodomain-like
PfamPF002494.2E-7327IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-8335IPR009057Homeodomain-like
CDDcd001672.04E-7327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
LLRWSAIAAK LPGRTDNEVK NFWHTHLKKR VQKNKVHNAN ITSFSYTLQE AQTSDASSSV  60
GEKIVISNYG LVASSKDPSV VGTEFCNAIS CDDTLGENMD NHGSCQISEE MEFWYSVFIK  120
SGQTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450568.17e-60transcription factor MYB4 isoform X1
TrEMBLA0A072U5D92e-58A0A072U5D9_MEDTR; Myb transcription factor
STRINGGLYMA19G43740.13e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.24e-17myb domain protein 15