PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7189
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Whirly
Protein Properties Length: 256aa    MW: 28574.7 Da    PI: 10.3021
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7189genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly188.51.1e-58782121137
                    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 
                               svyk+kaa+++ + +ptf++ldsg+l+++r+G++++ +++a++erkyd +kkq+falsatev++l+ +++++sceffhdp++k+s
  Tp57577_TGAC_v2_mRNA7189  78 SVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMSFMPAIGERKYDSDKKQRFALSATEVGSLIAMGPQDSCEFFHDPSMKSS 162
                               79*********************************************************************************** PP

                    Whirly  86 neGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                               n+G+vrk+l+++P+++  G+fv+l+v n+l++++++fsvPv+ aefav++++
  Tp57577_TGAC_v2_mRNA7189 163 NAGQVRKSLSIKPHSN--GYFVSLNVVNTLLNTKDNFSVPVTTAEFAVMKTA 212
                               *************986..7*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.1E-7266235IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.02E-6270254IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.0E-5579211IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTERKHKPQF RVREKRESVP KMLKLYRMLP SSSSSSSRNQ LLQILSYRKL EVRDFSTSTN  60
NYSAAKGYAS DRIFAPYSVY KGKAAFSLSP CLPTFTKLDS GALVVDRRGS IMMSFMPAIG  120
ERKYDSDKKQ RFALSATEVG SLIAMGPQDS CEFFHDPSMK SSNAGQVRKS LSIKPHSNGY  180
FVSLNVVNTL LNTKDNFSVP VTTAEFAVMK TACSFALPHI MGWDHLTSPT NQQSSGKVSF  240
QPKTNSHILD LEWEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A4e-84702278167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B4e-84702278167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C4e-84702278167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D4e-84702278167Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368330.0BT136833.1 Medicago truncatula clone JCVI-FLMt-6C3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626470.11e-140single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotQ8VYF71e-87WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLG7L2W41e-139G7L2W4_MEDTR; Putative transcription factor ssDNA-binding-TF family
STRINGAES826881e-140(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-89WHIRLY 2