PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7231
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 370aa    MW: 40459.8 Da    PI: 6.5444
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7231genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.81.8e-16186244361
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                               + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L+++l+  +k++   + 
  Tp57577_TGAC_v2_mRNA7231 186 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRDENSSLIQRLSDVNKKYRDSDH 244
                               78**********************************************99999876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-12183239No hitNo description
SMARTSM003381.5E-18184248IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.806186238IPR004827Basic-leucine zipper domain
PfamPF001702.1E-14187240IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.79E-12188238No hitNo description
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
PfamPF124984.6E-12255358IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MERVFSLVEI SEQDWLTLNG CKERDSKMNR SESEWALEQF LKQDAEETNN TSNAIPCSSS  60
STSTSSSTVD VKLNINNNNN NNDTVSLKTK LDLACAAVAK QLGSLVNSND PDNGSLASHP  120
PLPALKESGP SGNDPSKFQN KDVKVAAGVP SMQKKPAVSI RSTTSGSSDG EEAEGESNMN  180
GDMNPDAKRV RRMLSNRESA RRSRRRKQAH LTELETQVSQ LRDENSSLIQ RLSDVNKKYR  240
DSDHENRVLL AKLETLRAQV QLAEAEGRFL RRPGLNPMVN AMPEMSSVTG MEMSLFDRSP  300
SESSADAFVP VQEHRNNNFF QPTSDNLMSG RDMRGVNNWL GGNVSSAESV LKNTPAGGNA  360
LTKTSNRIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200207RRSRRRKQ
2202207SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7231
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626454.11e-131light-inducible protein CPRF2
TrEMBLG7L1X51e-130G7L1X5_MEDTR; Putative transcription factor bZIP family
STRINGAES826731e-126(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.28e-37bZIP family protein