PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7357
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 110aa    MW: 12628 Da    PI: 4.6366
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7357genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind84.31.8e-2652110260
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                               Fl+k+y+++ed+++++++sw+++g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+Y
  Tp57577_TGAC_v2_mRNA7357  52 FLTKTYDVVEDPTTSHIVSWNRDGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTY 110
                               9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-2845110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-2148110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-2450110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2252110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-175275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-1790102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-17103110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MNYLYPVKEE YLEIEATSSS ASTTYERGSD EGSMVVIPRP MEGLHEVGPP PFLTKTYDVV  60
EDPTTSHIVS WNRDGASFVV WDPNAFSRDL LPRYFKHNNF SSFVRQLNTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-1850110363Heat shock factor protein 2
5d8l_B3e-1850110363Heat shock factor protein 2
5d8l_D3e-1850110363Heat shock factor protein 2
5d8l_F3e-1850110363Heat shock factor protein 2
5d8l_H3e-1850110363Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7357
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4551223e-65DQ455122.1 Medicago truncatula cDNA-AFLP fragment BC21M13_50 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625396.12e-68heat stress transcription factor A-6b isoform X1
RefseqXP_024625397.12e-68heat stress transcription factor A-6b isoform X2
SwissprotQ338B03e-39HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A2K3LXY84e-76A0A2K3LXY8_TRIPR; Heat stress transcription factor a-6b-like protein
STRINGXP_004493725.18e-60(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-38heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]