PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7370
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 152aa    MW: 17437.8 Da    PI: 9.7488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.81.3e-168772091
                      FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                              ++ ++++++ +++++Csk+g+++++ +   + + +r+ +rt+C+a++k + +k+g +++tkl+l+HnHe++p
  Tp57577_TGAC_v2_mRNA7370  8 YYDNEKKQTRSKEYYCSKQGFKNNKLEG--EVSYERVDSRTNCNAMVKFNVSKEGLYKITKLVLNHNHEFVP 77
                              5556778899**************9988..8999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-13877IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
VRKGRELYYD NEKKQTRSKE YYCSKQGFKN NKLEGEVSYE RVDSRTNCNA MVKFNVSKEG  60
LYKITKLVLN HNHEFVPPEQ RHMLRSMRNL SNAKGDVIKS MVNSGMKVTN VWSYLGEEVG  120
GFNNLGITLK DMHNYVYTEK LKSIEAGDAQ A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636348.17e-82protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072UB453e-74A0A072UB45_MEDTR; FAR1 DNA-binding domain protein
STRINGAES755868e-62(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-21FAR1-related sequence 5