PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7596
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 138aa    MW: 16135.9 Da    PI: 10.5402
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7596genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.21e-081154144
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                              k i+n+  r+ +f++Rr+g++KK +  S    +ev++i+   +g
  Tp57577_TGAC_v2_mRNA7596 11 KHIQNEKVRKSSFIQRRKGLIKKVSKFSKNFRVEVCLIVCDGDG 54
                              689************************************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0012162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.741363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-13580IPR002100Transcription factor, MADS-box
PfamPF003194.4E-91354IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGRGGGKVTL KHIQNEKVRK SSFIQRRKGL IKKVSKFSKN FRVEVCLIVC DGDGDSKPMT  60
WPQDLSTLQS MLTKYEQQKI ETTPKKFDMQ DYFANKKNMV EAEILNVRKK IVMNKYPTWG  120
RPFNNLEMEQ LRSFVDIV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595578.12e-48MADS-box transcription factor 5
TrEMBLA0A2K3LQC55e-66A0A2K3LQC5_TRIPR; MADS-box transcription factor (Fragment)
STRINGAES658297e-48(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-13M-type_MADS family protein