PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7801
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 304aa    MW: 35486.3 Da    PI: 10.5682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7801genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-14105148347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                W +eE+ l++++ +++G+g+Wk+I++++g +R+  q+  + qk+
  Tp57577_TGAC_v2_mRNA7801 105 HWKEEEHRLFLEGLEKYGKGNWKAISKHVG-TRSYTQVARHAQKH 148
                               6*****************************.************98 PP
2Myb_DNA-binding25.92.3e-082492781747
                               HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  17 kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +++G+g+Wk+I++++g +++  q+ s+ qk+
  Tp57577_TGAC_v2_mRNA7801 249 EKHGKGNWKAISKHVG-TKSYTQVASHTQKH 278
                               79**************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-1096148IPR009057Homeodomain-like
PROSITE profilePS5129418.61298153IPR017930Myb domain
SuperFamilySSF466894.71E-14101152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-11101151IPR006447Myb domain, plants
SMARTSM007176.0E-12102151IPR001005SANT/Myb domain
CDDcd001671.65E-10106149No hitNo description
PfamPF002494.1E-13106148IPR001005SANT/Myb domain
SMARTSM007177.8241281IPR001005SANT/Myb domain
CDDcd001679.36E-4246274No hitNo description
PROSITE profilePS500904.321248279IPR017877Myb-like domain
SuperFamilySSF466895.91E-7248283IPR009057Homeodomain-like
PfamPF002499.0E-7249278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
LNNNHSLKNQ MNNINNNGNS KEWTWDDDKG FEQNLLEYPD LEGQWDKPAV LVPSSTTEVK  60
EHTQVITEDH LELSKYSDNC ITKDKASIDE NKATPVKKKI KKVLHWKEEE HRLFLEGLEK  120
YGKGNWKAIS KHVGTRSYTQ VARHAQKHFI RIGVNQQSDN SSKKSKRKDK FDTTKWNGDF  180
HPLLYRDYIP PPHPSSNLQT QPIVYQCQHT QMIVFQKTML RWVKTKLLLS RIRPRKCFIG  240
KKNNTKRLEK HGKGNWKAIS KHVGTKSYTQ VASHTQKHFI RVDQQRVDSS KKSKRRSKFD  300
TTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616068.32e-48transcription factor DIVARICATA
TrEMBLA0A2K3MBX17e-68A0A2K3MBX1_TRIPR; Transcription factor DIVARICATA-like protein
STRINGAES990267e-48(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2055925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-19MYB family protein