PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7829
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 244aa    MW: 28344.9 Da    PI: 9.9822
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7829genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-204087249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              + +n+   qvtf kRr gi+KKA+EL++LC+a+va+i+fs+  k++ +
  Tp57577_TGAC_v2_mRNA7829 40 KMSNEKHLQVTFWKRRSGIFKKASELCTLCGADVALILFSPGEKVFSF 87
                              67899999**********************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-273190IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.63191IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-223296IPR002100Transcription factor, MADS-box
CDDcd001201.31E-263288No hitNo description
PRINTSPR004041.0E-163353IPR002100Transcription factor, MADS-box
PfamPF003199.3E-224187IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-165368IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-166889IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRRTNISSKK EICRIKEKMR EKRQHEYVKG RGHQKIEIKK MSNEKHLQVT FWKRRSGIFK  60
KASELCTLCG ADVALILFSP GEKVFSFGAK LHYKSFILFF CNTLCFGHPN IHTVIDHYLS  120
LVPPQNNRTM QFIEAQRSAN VNELNAQLIM LNNTLDLKKR HSDELNQMLK MNQAQYWWAC  180
PIDGMNKDEL EIFKKSLEDL KILVAQQAQF FETQFFQNPL FQPHLFGFNN MGGQGGYGPS  240
GFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7829
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496799.12e-92agamous-like MADS-box protein AGL62
TrEMBLA0A2Z6NN061e-107A0A2Z6NN06_TRISU; Uncharacterized protein
STRINGXP_004496799.17e-92(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-43AGAMOUS-like 62