PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7832
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 245aa    MW: 27891.8 Da    PI: 4.9393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7832genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-145598755
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                                Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L+
  Tp57577_TGAC_v2_mRNA7832 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQHLH 98
                              67*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6534897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1850114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.89E-1352102No hitNo description
Gene3DG3DSA:4.10.280.106.3E-1754112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MENIGDEYKH YWETNMFLQT QELDSWGLDE AFSGYYDSSS PDGAASSAAS SKNIVSERNR  60
RKKLNERLFA LRAVVPNISK MDKASIIKDA IEYIQHLHEQ EKIIQAEIME LELGMPNNIN  120
PNYDYDQELP VLLRSKKKRT DQLYDSVNSR NSPIEVLELR VTYMGENTIV VSLTCSKRTD  180
TMVKLCEVFE SLKLKIITAN ITSFSGRLLK TVFIEANEDE KDLLQIKIRT AIATLNDPLS  240
PMSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1353113967Transcription factor MYC2
5gnj_B2e-1353113967Transcription factor MYC2
5gnj_E2e-1353113967Transcription factor MYC2
5gnj_F2e-1353113967Transcription factor MYC2
5gnj_G2e-1353113967Transcription factor MYC2
5gnj_I2e-1353113967Transcription factor MYC2
5gnj_M2e-1353113967Transcription factor MYC2
5gnj_N2e-1353113967Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1396080.0BT139608.1 Medicago truncatula clone JCVI-FLMt-13I5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595077.11e-164transcription factor bHLH35 isoform X1
SwissprotQ2HIV94e-93BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A346H7861e-164A0A346H786_9FABA; Transcription factor
STRINGAES653281e-163(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-86bHLH family protein