PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7852
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 152aa    MW: 16737.7 Da    PI: 10.1294
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7852genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062120143123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               y+Cp C+ + +++  + +H +  H
  Tp57577_TGAC_v2_mRNA7852 120 YTCPTCKIVLTTSQKYANHVKWiH 143
                               9******************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280122144IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MNIEKLREWA FGHNTVTNTH NRSSSNVESS SSSSSLINND MDNVINQNMM MTNANVASIH  60
PDLVGGLLSH SEPTSQTSNV AATNGDEFGD GSNNRKKKKK KKNVDDGSIR SLPYKKYGPY  120
TCPTCKIVLT TSQKYANHVK WIHHKDGKKK T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100NRKKKKKK
295101KKKKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3KIB65e-60A0A2K3KIB6_TRIPR; C2H2-type zinc finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.18e-13C2H2-like zinc finger protein