PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7859

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 158aa MW: 18481.6 Da PI: 10.1773

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7859	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.7	9.4e-11	10	48	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i n s r+ + kR++gi+KK E+ +LCd+ ++ ii Tp57577_TGAC_v2_mRNA7859 10 FICNISARKECYRKRKKGIIKKMREIKILCDIPACAIIS 48 6889999999*************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.685	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-7	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-17	4	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-12	10	50	IPR002100	Transcription factor, MADS-box
Gene3D	G3DSA:1.20.58.90	4.6E-4	48	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MAGKKVKVAF ICNISARKEC YRKRKKGIIK KMREIKILCD IPACAIISNP FNSNNIEVWP 60 DLEEAKQVIE RYQNLSQIDK TKNVNQESFV LQRLTKAREK LEKQRQEIRD KEMTIRMIQY 120 MKNKNLPDDV SVSDLKHFQK LIEENLKDID NKLNGSN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	25	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7859

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003614286.1	3e-65	agamous-like MADS-box protein AGL80
TrEMBL	A0A2K3M4B5	1e-108	A0A2K3M4B5_TRIPR; Agamous-like mads-box protein agl80-like
STRING	AES97244	1e-64	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13237	9	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	1e-27	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7859