PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7969

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 172aa MW: 19424.6 Da PI: 6.2687

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7969	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	36.1	1.3e-11	10	50	22	59
EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrCt++ gC+++k+v++ +edp + ++tY g+H+++ Tp57577_TGAC_v2_mRNA7969 10 RNYYRCTHKyeqGCKATKQVQKIQEDPLLHKTTYYGHHTCR 50 99****99999***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	2.88E-11	9	50	IPR003657	WRKY domain
SMART	SM00774	4.2E-8	10	51	IPR003657	WRKY domain
Pfam	PF03106	5.3E-11	10	50	IPR003657	WRKY domain
PROSITE profile	PS50811	10.774	10	47	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.7E-11	10	50	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MNVYIYVIFR NYYRCTHKYE QGCKATKQVQ KIQEDPLLHK TTYYGHHTCR LIQNPEIIVD 60 SLSPAHHSSM FLSFDNSFPT PTKQDCPFLS TSSHPSSTSS SVKKEECKEE IVNPPPPPPP 120 PSSSHNDYLS GLTFDDSDRH VTLSSTLDSH DHLGVNISDI LYDDVLNWPL S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7969

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003623638.1	2e-77	probable WRKY transcription factor 70
TrEMBL	A0A2K3NF97	1e-114	A0A2K3NF97_TRIPR; WRKY transcription factor
STRING	AES79856	6e-77	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	2e-14	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7969