PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8083
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 361aa    MW: 41013.6 Da    PI: 5.2876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8083genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.2e-50181651128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyat 70 
                               lppGfrFhPtdeel+ +yLk+kveg ++el evi+ +d yk++Pw+Lp                 + +++ ew+fF++rd+ky++
  Tp57577_TGAC_v2_mRNA8083  18 LPPGFRFHPTDEELIGYYLKRKVEGLEIEL-EVIPVIDFYKFDPWELPGrsssishvdrlheksFLPKRDMEWFFFCPRDRKYPN 101
                               79****************************.99***************54788888887655443333778************** PP

                       NAM  71 gkrknratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               g+r+nratk+gyWkatgkd++v+++      +++++g +ktLvfy grap g +t+W+mheyrl
  Tp57577_TGAC_v2_mRNA8083 102 GSRTNRATKAGYWKATGKDRKVVCEpspfisTETVTGYRKTLVFYCGRAPLGDRTNWIMHEYRL 165
                               ************************99999988888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5513185IPR003441NAC domain
PROSITE profilePS5100555.80418185IPR003441NAC domain
PfamPF023657.8E-2919165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDSSKEHRKI DRMGGTSLPP GFRFHPTDEE LIGYYLKRKV EGLEIELEVI PVIDFYKFDP  60
WELPGRSSSI SHVDRLHEKS FLPKRDMEWF FFCPRDRKYP NGSRTNRATK AGYWKATGKD  120
RKVVCEPSPF ISTETVTGYR KTLVFYCGRA PLGDRTNWIM HEYRLNDDPS QGSEGVFALC  180
RVIKKNEKEN DSRGQGGKRV RANDGNNSIS TEGNEVSCQA SQLCSGNESH FSSPIDFPCN  240
LPNMAGFDQV SSDTNPSTFW LSPDMILDSS KDYSQIQVQD VEGCFQQQHD LSSTMTPWQS  300
FEHTEISPCS SYSNFNAEIE FSDALSRIGC VSPYLGQGSF MDLPYECYDQ IHSFTNPNQF  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4781867166NO APICAL MERISTEM PROTEIN
1ut4_B1e-4781867166NO APICAL MERISTEM PROTEIN
1ut7_A1e-4781867166NO APICAL MERISTEM PROTEIN
1ut7_B1e-4781867166NO APICAL MERISTEM PROTEIN
4dul_A1e-4781867166NAC domain-containing protein 19
4dul_B1e-4781867166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8083
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317381e-124CR931738.1 Medicago truncatula chromosome 5 clone mth2-56k10, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611470.20.0NAC domain-containing protein 71
SwissprotO496971e-94NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A2K3NPZ30.0A0A2K3NPZ3_TRIPR; NAC domain-containing protein
STRINGAES944280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.16e-97NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]