PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8097

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 152aa MW: 17198.8 Da PI: 7.9118

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8097	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.6e-18	55	102	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Tp57577_TGAC_v2_mRNA8097 55 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYL 102 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-25	46	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.797	50	106	IPR017930	Myb domain
SMART	SM00717	4.9E-15	54	104	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-17	55	102	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.55E-22	56	130	IPR009057	Homeodomain-like
CDD	cd00167	7.45E-12	57	102	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-7	106	129	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MILEPQKDLS WTTNIAGFVV MNPFWQEKCS SSSSESFEVS SMGRPPCCDK VGVKKGPWTP 60 EEDIILVSYI QEHGPGNWRS VPTNTGLSRC SKSCRLRWTN YLRPGIKRGN FTPHEEGMII 120 HLQALLGNNH IITQLIEALY LHTFHKEQIM I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8097

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT135315	9e-88	BT135315.1 Lotus japonicus clone JCVI-FLLj-18D4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028761366.1	3e-61	transcription factor MYB60-like
Swissprot	B3VTV7	3e-60	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A0L9U759	2e-59	A0A0L9U759_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RX52	2e-59	A0A0S3RX52_PHAAN; Uncharacterized protein
TrEMBL	A0A151TAB8	2e-59	A0A151TAB8_CAJCA; Myb-related protein 306 family
TrEMBL	A0A1S3TBJ0	3e-59	A0A1S3TBJ0_VIGRR; myb-related protein 306
TrEMBL	A0A445L666	3e-59	A0A445L666_GLYSO; Transcription factor MYB30
TrEMBL	I1JK53	3e-59	I1JK53_SOYBN; Uncharacterized protein
STRING	GLYMA03G00890.1	5e-60	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8203	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-61	myb domain protein 60

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8097

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]