PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8126

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 350aa MW: 40447.4 Da PI: 6.4128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8126	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	7.2e-53	63	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv++yL++k++g+++++ v+kevd+yk++Pw+Lp++ +++ekewyfFs+rd+ky++g+r+nra+ sgyWka Tp57577_TGAC_v2_mRNA8126 63 LPPGFRFHPTDEELVNHYLCRKCAGQSISV-PVVKEVDLYKFDPWQLPEMGYQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKA 146 79**************************.89***********77778899************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk++ + + +g+kk Lvfy g+apkg+kt+W+mheyrl Tp57577_TGAC_v2_mRNA8126 147 TGADKPIGK--LKPMGIKKALVFYAGKAPKGVKTNWIMHEYRL 187 ***88..889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-61	58	213	IPR003441	NAC domain
PROSITE profile	PS51005	59.981	63	213	IPR003441	NAC domain
Pfam	PF02365	7.0E-28	64	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
LTLSLISNFI SQNTTTTTTT PTSSTRTRKR TRIIINSRVN FEDFGTILLT EQEETGMQGE 60 LELPPGFRFH PTDEELVNHY LCRKCAGQSI SVPVVKEVDL YKFDPWQLPE MGYQSEKEWY 120 FFSPRDRKYP NGSRPNRAAG SGYWKATGAD KPIGKLKPMG IKKALVFYAG KAPKGVKTNW 180 IMHEYRLANV DRSAGKKNNL RLDDWVLCRI YNKKGKIEKF NTNNTPKVQI QNYYEHEEEQ 240 EHEMKPEIKK LGNYHYMDTS DSVPKLNTDS SSSGHVVSPD ITCDREVQSE PKWNEFGIQL 300 DDAFDFQFNY LENALSFDYD DDPFGTNDQY QINQLSPLQD MFMFQQKPF*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

LTLSLISNFI SQNTTTTTTT PTSSTRTRKR TRIIINSRVN FEDFGTILLT EQEETGMQGE  60
LELPPGFRFH PTDEELVNHY LCRKCAGQSI SVPVVKEVDL YKFDPWQLPE MGYQSEKEWY  120
FFSPRDRKYP NGSRPNRAAG SGYWKATGAD KPIGKLKPMG IKKALVFYAG KAPKGVKTNW  180
IMHEYRLANV DRSAGKKNNL RLDDWVLCRI YNKKGKIEKF NTNNTPKVQI QNYYEHEEEQ  240
EHEMKPEIKK LGNYHYMDTS DSVPKLNTDS SSSGHVVSPD ITCDREVQSE PKWNEFGIQL  300
DDAFDFQFNY LENALSFDYD DDPFGTNDQY QINQLSPLQD MFMFQQKPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-81	52	219	4	174	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8126

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003602683.1	0.0	NAC domain-containing protein 2
Swissprot	Q39013	1e-123	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	B7FJL7	0.0	B7FJL7_MEDTR; NAC-like transcription factor
STRING	AES72935	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-123	NAC family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8126

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]